Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph extract_amplicon_kit.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_amplicon_kit.cwl

Branch/Commit ID: 1046947f8d2923e6563b3aceac9e435554c5bea1
workflow graph merge_duprem_filter.cwl

https://github.com/CompEpigen/ChIPseq_workflows.git

Path: CWL/workflow_modules/merge_duprem_filter.cwl

Branch/Commit ID: 8526687739a6802eeb08e97b27c20010225d5eb5
workflow graph Apply filters to VCF file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/germline_filter_vcf.cwl

Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416
workflow graph WGS and MT analysis for fastq files

rna / protein - qc, preprocess, filter, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/wgs-noscreen-fastq.workflow.cwl

Branch/Commit ID: 7b1df2ecce5a8727f2c546c5baa45c919edd8a76
workflow graph RNA-Seq alignment with qc

https://github.com/litd/analysis-workflows.git

Path: definitions/pipelines/rnaseq4.cwl

Branch/Commit ID: 1a908acc8059c2381ed146c6be1668f4bf1cfa73
workflow graph etl.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/fastq_readgroup_stats/etl.cwl

Branch/Commit ID: 1046947f8d2923e6563b3aceac9e435554c5bea1
workflow graph umi duplex alignment fastq workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_umi_duplex.cwl

Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec
workflow graph Detect DoCM variants

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/docm_germline.cwl

Branch/Commit ID: 1a908acc8059c2381ed146c6be1668f4bf1cfa73
workflow graph ACTseq_spike_in.cwl

https://github.com/CompEpigen/ChIPseq_workflows.git

Path: CWL/workflows/ACTseq_spike_in.cwl

Branch/Commit ID: 8526687739a6802eeb08e97b27c20010225d5eb5
workflow graph WGS QC workflow mouse

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs_mouse.cwl

Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec