Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	ribosomal_cleanup This workflow detect and remove ribosomal from a DNA fasta file	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/Contamination/ribosomal-cleanup.cwl Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49
	assm_assm_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 5c40c5a0464c84076e0e407a0e05522b43bdc0a6
	bulk scRNA-seq pipeline using Salmon	https://github.com/hubmapconsortium/salmon-rnaseq.git Path: bulk-pipeline.cwl Branch/Commit ID: c502823c0b078737ef4533b1509e25d58cb3a78a
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46
	Filter single sample sv vcf from depth callers(cnvkit/cnvnator)	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46
	Execute CRISPR	https://github.com/ncbi/pgap.git Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: caef51e546c584fa4402e9814558de75bc07becf
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_md5checksums/workflow.cwl Branch/Commit ID: 5910b4d88aca172252d9102ddb610a7dc9e1347f
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46
	default-dir5.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/default-dir5.cwl Branch/Commit ID: 20f01e04328537714e57d136e242d3e7a9d44266
	trnascan_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: caef51e546c584fa4402e9814558de75bc07becf