Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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wf_full_IDR_pipeline_2inputs.cwl
The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_full_IDR_pipeline_2inputs.cwl Branch/Commit ID: fadfca0f6da710104c4cf7931e9ab2656f5f737d |
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Bisulfite QC tools
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: 9e5f228bc1a3d0dfe950b5d41d7e4319e834a6d4 |
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tt_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee |
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genomics-workspace-transcript.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace-transcript.cwl Branch/Commit ID: 3aabbb0f6635bb9354ad52f616ab7cfc61848eb6 |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a |
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trnascan_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee |
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WGS QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f |
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tt_fscr_calls_pass1
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https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 9e5f228bc1a3d0dfe950b5d41d7e4319e834a6d4 |
