Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: master |
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id_to_json_workflow.cwl
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https://github.com/sfu-ireceptor/airr-seqaa.git
Path: cwl/id_to_json_workflow.cwl Branch/Commit ID: master |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: dev |
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Unaligned to aligned BAM
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https://github.com/MarkRobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: master Packed ID: align.cwl |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: master |
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trim-rnaseq-pe-dutp.cwl
Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-pe-dutp.cwl Branch/Commit ID: master |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: f993cad |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: fa86fce |
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<YOUR CHALLENGE> Evaluation
BRIEF DESCRIPTION ABOUT THE CHALLENGE, e.g. This workflow will run and evaluate Docker submissions to the Awesome Challenge (syn123). Metrics returned are x, y, z. |
https://github.com/osmaoui/model-to-data-challenge-workflow.git
Path: workflow.cwl Branch/Commit ID: main |
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qiime2 Deblur detect/correct sequence data
Option 2: Deblur from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-03-deblur.cwl |
