Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	spurious_annot	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c
	kf_alignment_fq_input_wf.cwl	https://github.com/cr-ste-justine/chujs-alignment-workflow.git Path: workflows/kf_alignment_fq_input_wf.cwl Branch/Commit ID: c8255e2aab840f671d9f142d74f915c76415ff51
	Execute CRISPR	https://github.com/ncbi/pgap.git Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 049f4aeff4c4a1b8421cac9b1c1c1f0da5848315
	RNA-Seq alignment with qc	https://github.com/litd/analysis-workflows.git Path: definitions/pipelines/rnaseq4.cwl Branch/Commit ID: 18d8efdc4c97c1c9222f603f529b909b36fa42e7
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87
	rRNA_selection.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/rRNA_selection.cwl Branch/Commit ID: 1b0851e6456ccb1fca237a805ff85c53bc9d58c9
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c
	foreign_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/foreign_screening.cwl Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c
	Subsample BAM file creating a tagAlign and pseudoreplicates This workflow creates a subsample from a BAM file creating a tagAlign and pseudoreplicates	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/File-formats/subample-pseudoreplicates.cwl Branch/Commit ID: 06501cfc314e36749043431e67c2990966b452e0