Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	umi per-lane alignment subworkflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 7b4b489474473c3d2d992a838b89632c2b97dc2c
	Unaligned bam to sorted, markduped bam	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	exome alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a
	exome alignment with qc, no bqsr, no verify_bam_id	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome_mouse.cwl Branch/Commit ID: 42c66dd24ce5026d3f717214ddb18b7b4fae93cf
	kmer_top_n_extract	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: b560e3abadfb150a0013376d7a189df066ab56f9
	gatk4_cohort_genotyping.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/variant_calling/gatk4_cohort_genotyping.cwl Branch/Commit ID: f83b0e3d2ab7a29a0425bf25b5bae68c3dc70999
	freebayes.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/variant_calling/freebayes.cwl Branch/Commit ID: f83b0e3d2ab7a29a0425bf25b5bae68c3dc70999
	download_check.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/utils/download_check.cwl Branch/Commit ID: f83b0e3d2ab7a29a0425bf25b5bae68c3dc70999
	Raw sequence data to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 2e298960837739717ec2928a99c5d811183012e6
	tt_kmer_top_n.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: b560e3abadfb150a0013376d7a189df066ab56f9