Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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RSeQC workflow or single-end samples
This workflow runs the RSeQC quality control workflow |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/RSeQC/rseqc-bam-qc-SE.cwl Branch/Commit ID: master |
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g_vc.cwl
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https://github.com/sylviaJian/test_pipelines.git
Path: g_vc.cwl Branch/Commit ID: main |
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cmsearch-multimodel.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: f6b5196 |
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chksum_xam_to_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_xam_to_interleaved_fq.cwl Branch/Commit ID: 0.5.0 |
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ValidateTelescopeEfficiency
Validate telescope throughput taking into account the optical (mirror configurations, reflectivity, shadowing elements, camera filter, light cones) and camera (photo-detection efficiency) components. |
https://github.com/gammasim/workflows.git
Path: workflows/ValidateTelescopeEfficiency.cwl Branch/Commit ID: main |
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wf_clipseqcore_pe_1barcode.cwl
Workflow for handling reads containing one barcode. Returns the bam file containing read2 only. Notes: runs the following steps: - demultiplex - trimfirst_file2string - trimagain_file2string - b1_trim_and_map - view_r2 - index_r2_bam - make_bigwigs |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_clipseqcore_pe_1barcode.cwl Branch/Commit ID: master |
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preprocess-ont.cwl
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https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git
Path: PreProcessing/preprocess-ont.cwl Branch/Commit ID: preprocessing |
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HBA_calibrator.cwl
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https://git.astron.nl/RD/LINC.git
Path: workflows/HBA_calibrator.cwl Branch/Commit ID: master |
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bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/bam_filtering.cwl Branch/Commit ID: 3bb03c9b |
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Trim and reformat reads (single and paired end version)
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/trim_and_reformat_reads.cwl Branch/Commit ID: master |
