Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph 04-peakcall-pe.cwl

ATAC-seq 04 quantification - PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/04-peakcall-pe.cwl

Branch/Commit ID: master
workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 8515542
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 2104dc3
workflow graph bqsr_workflow.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/BQSR/bqsr_workflow.cwl

Branch/Commit ID: master
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: fa86fce
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: master
workflow graph etl.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/etl.cwl

Branch/Commit ID: 1.1
workflow graph Preprocess fastq

Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/preprocess-fastq.workflow.cwl

Branch/Commit ID: master
workflow graph rnaseq-pt1.cwl

Star/HTSeq RNA Seq Pipeline

 https://github.com/Duke-GCB/bespin-cwl.git

Path: workflows/rnaseq-pt1.cwl

Branch/Commit ID: master
workflow graph count-lines13-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines13-wf.cwl

Branch/Commit ID: master