Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 76a9637a06e2102645eae29aff10b6f7185892a5 |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 2e298960837739717ec2928a99c5d811183012e6 |
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Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 5331b0836aa7c451d759ef39dc2062000ac21a47 |
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js_output_workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/js_output_workflow.cwl Branch/Commit ID: 9f3b9e7b74d5a904b12674dfd1300b56a48c3d33 |
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Non-Coding Bacterial Genes
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 497175e1851779c57253d71144860747430d52b1 |
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dedup-2-pass.cwl
run 2-pass dedup: algo LocusCollector + algo Dedup sequentially |
https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/dedup-2-pass.cwl Branch/Commit ID: d20382adfe7285cb517a25d95d2bcb7586546e23 |
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scatter-valuefrom-wf6.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf6.cwl Branch/Commit ID: 445f6b3a214f0c48317b25f7af278ae919ce5403 |
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bacterial_kmer
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https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: 497175e1851779c57253d71144860747430d52b1 |
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Exome QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: 42c66dd24ce5026d3f717214ddb18b7b4fae93cf |
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Run tRNAScan
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 5331b0836aa7c451d759ef39dc2062000ac21a47 |
