Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph maf2vcf_gz_workflow.cwl

Workflow to convert a maf file into a vcf.gz with .tbi index

https://github.com/mskcc/pluto-cwl.git

Path: cwl/maf2vcf_gz_workflow.cwl

Branch/Commit ID: master
workflow graph download_gtf.cwl

https://github.com/yyoshiaki/VIRTUS2.git

Path: workflow/download_gtf.cwl

Branch/Commit ID: master
workflow graph wgs_alignment_fq_wf.cwl

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/wgs_alignment_fq_wf.cwl

Branch/Commit ID: dev
workflow graph qiime2 explore sample taxonomic composition

Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-08-taxonomic-analysis.cwl

Branch/Commit ID: develop
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/svonworl/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: develop
workflow graph icgc_pcawg_dkfz_embl_workflow.cwl

https://github.com/sbg/sbg_dockstore_tools.git

Path: pcawg/vc/icgc_pcawg_dkfz_embl_workflow.cwl

Branch/Commit ID: master
workflow graph star_samtools_featurecounts_edger.cwl

https://github.com/rawgene/cwl.git

Path: workflows/star_samtools_featurecounts_edger.cwl

Branch/Commit ID: master
workflow graph helloworld-slurmcern.cwl

https://github.com/reanahub/reana-demo-helloworld.git

Path: workflow/cwl/helloworld-slurmcern.cwl

Branch/Commit ID: master
workflow graph databkgmc.cwl

https://github.com/lukasheinrich/cwltests.git

Path: cwl/databkgmc.cwl

Branch/Commit ID: master
workflow graph chksum_for_corrupted_files.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_for_corrupted_files.cwl

Branch/Commit ID: 0.5.0_test