Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0 |
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1st-workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/1st-workflow.cwl Branch/Commit ID: 07ebbea2bdf97955060c1dd563580b386388519b |
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run-best-alg-by-cor.cwl
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https://github.com/PNNL-CompBio/decomprolute.git
Path: metrics/mrna-prot/run-best-alg-by-cor.cwl Branch/Commit ID: 102f6c7259c126e58d733aac476386afe0f20b73 |
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umi per-lane alignment subworkflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea |
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03-local-deconv-cor.cwl
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https://github.com/PNNL-CompBio/decomprolute.git
Path: localData/03-local-deconv-cor.cwl Branch/Commit ID: 6351764c74a44fc4fa2042d31c0cedde5a5bdbe9 |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea |
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1st-workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/1st-workflow.cwl Branch/Commit ID: c7c379948c02ba8f048d157f06eb903b1bda9894 |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0 |
