Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: f2bd4687f06f85ea848b6f1ce04ec97f48525334 |
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count-lines1-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/count-lines1-wf.cwl Branch/Commit ID: 445f6b3a214f0c48317b25f7af278ae919ce5403 |
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bams2gvcf.woBQSR_male.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR_male.cwl Branch/Commit ID: 90742a252865d50bec7b0b167ccecf6f1424ea28 |
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Bisulfite alignment and QC
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a |
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spurious_annot pass2
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: 5331b0836aa7c451d759ef39dc2062000ac21a47 |
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Merge, annotate, and generate a TSV for SVs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca |
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any-type-compat.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/any-type-compat.cwl Branch/Commit ID: 1e5ad10c6b0d1c5f531737d12ef64062a00baef2 |
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gcaccess_from_list
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https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 76a9637a06e2102645eae29aff10b6f7185892a5 |
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count-lines2-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines2-wf.cwl Branch/Commit ID: 1e5ad10c6b0d1c5f531737d12ef64062a00baef2 |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: c6bbd4cdd612b3b5cc6e9000df4800c21e192bf5 |
