Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 5331b0836aa7c451d759ef39dc2062000ac21a47
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87
	Transcripts annotation workflow	https://github.com/mscheremetjew/workflow-is-cwl.git Path: workflows/TranscriptsAnnotation-i5only-wf.cwl Branch/Commit ID: 72f702591368397f56d455128f60916902104dd2
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 42712bca4c3307d87b6b55f525a4c97cb6f7e288
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 457e101e3fb87e7fd792357afce00ed8ccbfbcdb
	step-valuefrom2-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/step-valuefrom2-wf.cwl Branch/Commit ID: f02557902989c749c9c2187c7045e340e2d76bfc
	gcaccess_from_list	https://github.com/ncbi/pgap.git Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 5331b0836aa7c451d759ef39dc2062000ac21a47
	bam to trimmed fastqs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268