Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Preprocess fastq

Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/preprocess-fastq.workflow.cwl

Branch/Commit ID: f5839797da8209a9d3e441023f88130219751020
workflow graph protein annotation

Proteins - predict, cluster, identify, annotate

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/protein-annotation.workflow.cwl

Branch/Commit ID: 81feefc84ec0faecf1ade718001d5f07610e616e
workflow graph protein annotation

Proteins - predict, cluster, identify, annotate

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/protein-annotation.workflow.cwl

Branch/Commit ID: 4e4d2e674bde612f98f2b0370445f8b2a47587df
workflow graph Decompress

Decompress mate pair fastq files

 https://github.com/MG-RAST/amplicon.git

Path: CWL/Workflows/decompress_mate_pair.workflow.cwl

Branch/Commit ID: 67fc58a072d6a72658a54244f6dded172f57314c
workflow graph kfdrc_RNAseq_workflow.cwl

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/kfdrc_RNAseq_workflow.cwl

Branch/Commit ID: e571438c9c0848bc053d1da8804762749e475bde
workflow graph kfdrc_alignment_pipeline.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/pilot-run/worklflows/kfdrc_alignment_pipeline.cwl

Branch/Commit ID: 391424d2801eeed6cfe8a35530b724d11f85a9ae
workflow graph kfdrc_bwamem_subwf.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/ultra-opt/kfdrc_bwamem_subwf.cwl

Branch/Commit ID: c9967fa6b52fb799710fe47512088a310a44cd04
workflow graph downsample unaligned BAM and align

https://github.com/genome/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/downsample_workflow.cwl

Branch/Commit ID: eb565eac07209017b12ed79057b40cbf44fb6a0d
workflow graph fasttree-compare.cwl

https://github.com/IFB-ElixirFr/ReproHackathon.git

Path: reprohackathon2/cwl/fasttree-compare.cwl

Branch/Commit ID: 6f72eeb118e1c9176318f3d5491fb5379fe5baff
workflow graph annotator_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: 00e98923d9ce49790080f88ae46f3d73a19eb65b