Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: ac387721a55fd91df3dcdf16e199354618b136d1 |
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count-lines3-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines3-wf.cwl Branch/Commit ID: 65aedc5e7e1f3ccace7f9022f8a54b3f0d5c9a8c |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 788bdc99c1d5b6ee7c431c3c011eb30d385c1370 |
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wf-loadContents2.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/wf-loadContents2.cwl Branch/Commit ID: 31ec48a8d81ef7c1b2c5e9c0a19e7623efe4a1e2 |
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trim-rnaseq-pe.cwl
Runs RNA-Seq BioWardrobe basic analysis with pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-pe.cwl Branch/Commit ID: 801f7b363e0599b9a28ecda696dfdb1c0e40ce71 |
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SoupX Estimate
SoupX Estimate ============== |
https://github.com/datirium/workflows.git
Path: workflows/soupx.cwl Branch/Commit ID: 36fd18f11e939d3908b1eca8d2939402f7a99b0f |
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heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/datirium/workflows.git
Path: tools/heatmap-prepare.cwl Branch/Commit ID: 00ea05e22788029370898fd4c17798b11edf0e57 |
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kmer_seq_entry_extract_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 1b8d71c75156a1a62bf0477d59db26010e2dcc29 |
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mut2.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mut2.cwl Branch/Commit ID: 280a852e74aec08cf79687e8004e17b1ab464534 |
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fillout_singleton_processing.cwl
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https://github.com/mskcc/pluto-cwl.git
Path: cwl/fillout_singleton_processing.cwl Branch/Commit ID: 462f6015c9268a4205b6e81de018a470b8a4a153 |
