Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph dynresreq-workflow.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/dynresreq-workflow.cwl

Branch/Commit ID: 665141f319e6b23bd9924b14844f2e979f141944
workflow graph Whole Exome Sequencing

Whole Exome Sequence analysis using GATK best practices - Germline SNP & Indel Discovery

https://github.com/Duke-GCB/bespin-cwl.git

Path: workflows/exomeseq.cwl

Branch/Commit ID: 66b46c15d266fdf6a1faabd8d2f1b257f3438efc
workflow graph SetArrayElementCoordinates

Transform array element coordinates into the coordinate system required by the simulation pipeline (i.e., CORSIKA system).

 https://gitlab.desy.de/gernot.maier/cwlsandbox.git

Path: workflows/SetArrayElementCoordinates.cwl

Branch/Commit ID: bcac29eec46bf13a768cfc18ff39de7a9d0f877f
workflow graph ValidateArrayElementCoordinates

Plot and compare array element coordinates.

 https://gitlab.desy.de/gernot.maier/cwlsandbox.git

Path: workflows/ValidateArrayElementCoordinates.cwl

Branch/Commit ID: bcac29eec46bf13a768cfc18ff39de7a9d0f877f
workflow graph 01-qc-pe.cwl

ChIP-seq 01 QC - reads: PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/01-qc-pe.cwl

Branch/Commit ID: 6e68bda2cb45e8dc8e4d067c4220d65acfa53065
workflow graph revsort.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/revsort.cwl

Branch/Commit ID: d7b1bf353dcc43c707c49a018f2870584821d389
workflow graph hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl

Branch/Commit ID: 8a8fffb78b1e327ba0da51840ac8acc0c218d611
workflow graph xenbase-fastq-bowtie-bigwig-se-pe.cwl

https://github.com/datirium/workflows.git

Path: subworkflows/xenbase-fastq-bowtie-bigwig-se-pe.cwl

Branch/Commit ID: 2d00e7f29c72d33b70dcd46b58db1fc31a7f2d86
workflow graph RNA-seq (VCF) alelle specific pipeline for single-read data

Allele specific RNA-Seq (using vcf) single-read workflow

https://github.com/datirium/workflows.git

Path: workflows/allele-vcf-rnaseq-se.cwl

Branch/Commit ID: 4106b7dc96e968db291b7a61ecd1641aa3b3dd6d
workflow graph iwdr_with_nested_dirs.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/iwdr_with_nested_dirs.cwl

Branch/Commit ID: 665141f319e6b23bd9924b14844f2e979f141944