Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph rnaseq-star-rsem-deseq2.cwl

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/rna-seq/rnaseq-star-rsem-deseq2/rnaseq-star-rsem-deseq2.cwl

Branch/Commit ID: main
workflow graph metrics-flow.cwl

Run metrics workflow

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/metrics-flow.cwl

Branch/Commit ID: master
workflow graph idr.cwl

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/idr.cwl

Branch/Commit ID: 3247592a89deafaa0d9c5910a1cb1d000ef9b098
workflow graph SC w/ Evaluation

Serial combination of KnowEnG tools

 https://github.com/knoweng-research/cwl-specification.git

Path: code/workflow.sc.cwl

Branch/Commit ID: master
workflow graph trim-rnaseq-pe-dutp.cwl

Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file.

https://github.com/datirium/workflows.git

Path: workflows/trim-rnaseq-pe-dutp.cwl

Branch/Commit ID: cb5e5b8563be4977e9f2babc14fe084faa234847
workflow graph ug-distr.cwl

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/ug-distr.cwl

Branch/Commit ID: master
workflow graph bgzip and index VCF

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bgzip_and_index.cwl

Branch/Commit ID: master
workflow graph testDirLayout.cwl

https://github.com/klimstef/testing-for-Haqseq.git

Path: cwl_s/testDirLayout.cwl

Branch/Commit ID: master
workflow graph standard_bam_to_collapsed_qc.cwl

This is a workflow to go from standard bams to collapsed bams and QC results.

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/subworkflows/standard_bam_to_collapsed_qc.cwl

Branch/Commit ID: master
workflow graph umi molecular alignment workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/molecular_alignment.cwl

Branch/Commit ID: master