Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
create_fig.cwl
|
https://github.com/jniestroy/cwl_parser.git
Path: workflows/create_fig.cwl Branch/Commit ID: master |
|
|
|
Run genomic CMsearch
|
https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: test |
|
|
|
count-lines8-wf.cwl
|
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines8-wf.cwl Branch/Commit ID: master |
|
|
|
steps.cwl
|
https://github.com/DimitraPanou/scRNAseq-cwl.git
Path: steps.cwl Branch/Commit ID: master |
|
|
|
bams2gvcf.woBQSR.cwl
|
https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR.cwl Branch/Commit ID: master |
|
|
|
biowardrobe_chipseq_se.cwl
The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
https://github.com/Barski-lab/ga4gh_challenge.git
Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: master |
|
|
|
SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination
Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs. |
https://github.com/Barski-lab/workflows.git
Path: tools/soupx-subworkflow.cwl Branch/Commit ID: master |
|
|
|
black-diamond-workflow.cwl
|
https://github.com/pegasus-isi/cwl-to-dax-reference.git
Path: black-diamond-workflow/cwl/black-diamond-workflow.cwl Branch/Commit ID: master |
|
|
|
chksum_xam_to_interleaved_fq.cwl
|
https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_xam_to_interleaved_fq.cwl Branch/Commit ID: 0.3.0 |
|
|
|
Spliced RNAseq workflow
Workflow for Spliced RNAseq data Steps: - workflow_illumina_quality: - FastQC (Read Quality Control) - fastp (Read Trimming) - STAR (Read mapping) - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts) |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_RNAseq_Spliced.cwl Branch/Commit ID: master |
