Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b
	cwlsite.cwl	https://github.com/common-workflow-language/cwl-website.git Path: site/cwlsite.cwl Branch/Commit ID: 9bfcd1b83fe13e2bababec2c43356db832a030d7
	workflow.cwl	https://github.com/52North/testbed16-jupyter-notebooks.git Path: workflow_water_masks/workflow.cwl Branch/Commit ID: 56e89ba5babd93134012f77a63027a7a2f65b927
	simple_two_step.cwl	https://github.com/ncbi/cwl-demos.git Path: blast-pipelines/simple_two_step.cwl Branch/Commit ID: 342d1669431d15c8a27589e4c22a91a05033b56c
	workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_create_genomics-workspace_yml/flow_create_yml/workflow.cwl Branch/Commit ID: 3aabbb0f6635bb9354ad52f616ab7cfc61848eb6
	02-trim-se.cwl RNA-seq 02 trimming - reads: SE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/RNA-seq_pipeline/02-trim-se.cwl Branch/Commit ID: 4636f2c1a8bcfceeb4b3596ee29e9c06311ed4a1
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: b465f0da2806ddb6df481409541d13288ccb40ec
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee
	Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601