Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Functional analyis of sequences that match the 16S SSU

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: 5e82174
workflow graph ribosomal_cleanup

This workflow detect and remove ribosomal from a DNA fasta file

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/ribosomal-cleanup.cwl

Branch/Commit ID: master
workflow graph wf-variantcall.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: wes-agha-test/wes_chr21_test-workflow-arvados/wf-variantcall.cwl

Branch/Commit ID: master
workflow graph RNA-Seq alignment and transcript/gene abundance workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/rnaseq.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph mutect panel-of-normals workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/panel_of_normals.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph abra_workflow.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/ABRA/abra_workflow.cwl

Branch/Commit ID: master
workflow graph canine_tumor_only_variant_filter_module.cwl

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_tumor_only_variant_filter_module.cwl

Branch/Commit ID: master
workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 0cf06f1
workflow graph pcawg_minibam_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: pcawg_minibam_wf.cwl

Branch/Commit ID: develop
workflow graph any-type-compat.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/any-type-compat.cwl

Branch/Commit ID: main