Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass3.cwl

Branch/Commit ID: c28cfb9882dedd3c522160f933cff1050ae24100
workflow graph umi per-lane alignment subworkflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/umi_alignment.cwl

Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97
workflow graph exomeseq-gatk4-03-organizedirectories.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-gatk4-03-organizedirectories.cwl

Branch/Commit ID: bbe24d8d7fde2e918583b96805909a2867b749d6
workflow graph tt_hmmsearch_wnode.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode.cwl

Branch/Commit ID: f2bd4687f06f85ea848b6f1ce04ec97f48525334
workflow graph exome alignment with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_exome.cwl

Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca
workflow graph Unaligned to aligned BAM

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align.cwl

Branch/Commit ID: 9143dc4ebacb9e1df36a712b0be6fa5d982b0c4f
workflow graph kb-tss-preprocess-all.cwl#kb-tss-preprocess-single-dir.cwl

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/kb-tss-preprocess-all.cwl

Branch/Commit ID: a62bf3b31df83784c017d30a83ed8e01d454bf1c

Packed ID: kb-tss-preprocess-single-dir.cwl
workflow graph TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)

https://github.com/inab/vre_cwl_executor.git

Path: tests/trans_decoder/data/workflows/TransDecoder-v5-wf-2steps.cwl

Branch/Commit ID: b777e57eb5a86183cb4b10f9039db5cec5c597cf
workflow graph Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass1.cwl

Branch/Commit ID: c28cfb9882dedd3c522160f933cff1050ae24100
workflow graph kmer_top_n_extract

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_top_n_extract.cwl

Branch/Commit ID: be465ad19b07378f3f863f2c4e0019b420c859f2