Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	1st-workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/1st-workflow.cwl Branch/Commit ID: cb81b22abc52838823da9945f04d06739ab32fda
	steplevel-resreq.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/steplevel-resreq.cwl Branch/Commit ID: aaaece1c097c3f06afa21f7ecddcc85519e2bb2b
	basename-fields-test.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/basename-fields-test.cwl Branch/Commit ID: aaaece1c097c3f06afa21f7ecddcc85519e2bb2b
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 22fce2dbdada0c4135b6f0677f78535cf980cb07
	sequence (bam or fastqs) to trimmed fastqs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_trimmed_fastq.cwl Branch/Commit ID: 889a077a20c0fdb01f4ed97aa4bc40f920c37a1a
	kmer_cache_store	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 4def84df33963fc9ac9d5c5f804b911d01a0d9ad
	WGS QC workflow mouse	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs_mouse.cwl Branch/Commit ID: 295e7b7f51727c0f2d6cc86ce817449b2e8dba3c
	Single-cell Multiome ATAC and RNA-Seq Alignment Single-cell Multiome ATAC and RNA-Seq Alignment Runs Cell Ranger ARC Count to quantifies chromatin accessibility and gene expression from a single-cell Multiome ATAC and RNA-Seq library	https://github.com/Barski-lab/sc-seq-analysis.git Path: workflows/sc-multiome-align-wf.cwl Branch/Commit ID: 9064af1cdd8e97bcdf4473e2a741e1ada1a7c4f3
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: 295e7b7f51727c0f2d6cc86ce817449b2e8dba3c
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 295e7b7f51727c0f2d6cc86ce817449b2e8dba3c