Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl
|
https://github.com/common-workflow-language/workflows.git
Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl Branch/Commit ID: h3abionet-gatk-workflow |
|
|
|
Salmon quantification, FASTQ -> H5AD count matrix
|
https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: steps/salmon-quantification.cwl Branch/Commit ID: release |
|
|
|
methylCtools_index.cwl
|
https://github.com/ifishlin/Benchmarking_CWL.git
Path: workflows/methylCtools/tools/methylCtools_index.cwl Branch/Commit ID: main |
|
|
|
pipeline-fastq2vcf.cwl
DNAseq pipeline from fastq to vcf |
https://github.com/Sentieon/Sentieon-cwl.git
Path: pipeline/pipeline-fastq2vcf.cwl Branch/Commit ID: master |
|
|
|
WES Preprocessing
Whole Exome Sequence analysis Preprocessing |
https://github.com/Duke-GCB/bespin-cwl.git
Path: workflows/exomeseq-preprocessing.cwl Branch/Commit ID: master |
|
|
|
encode_mapping_workflow.cwl
|
https://github.com/ENCODE-DCC/pipeline-container.git
Path: local-workflows/encode_mapping_workflow.cwl Branch/Commit ID: v1.0 |
|
|
|
zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: master |
|
|
|
EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: a8abd0e |
|
|
|
wgs alignment and germline variant detection
|
https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/germline_wgs_gvcf.cwl Branch/Commit ID: low-vaf |
|
|
|
chksum_seqval_wf_interleaved_fq.cwl
|
https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 0.2.0 |
