Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
trim_and_map.cwl
|
https://github.com/CompEpigen/ATACseq_workflows.git
Path: CWL/workflow_modules/trim_and_map.cwl Branch/Commit ID: master |
|
|
|
gethoge-and-pigz.cwl
|
https://github.com/dbcls/AOE.git
Path: gethoge-and-pigz.cwl Branch/Commit ID: master |
|
|
|
EMG assembly for paired end Illumina
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 8515542 |
|
|
|
Unaligned BAM to BQSR and VCF
|
https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: No_filters_detect_variants |
|
|
|
collate_unique_SSU_headers.cwl
|
https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 9c57dba |
|
|
|
EMG pipeline v3.0 (single end version)
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: master |
|
|
|
exome alignment and germline variant detection
|
https://github.com/genome/cancer-genomics-workflow.git
Path: germline_exome_workflow.cwl Branch/Commit ID: toil_compatibility |
|
|
|
per_cluster_workflow.cwl
|
https://github.com/mr-c/scalability-reproducibility-chapter.git
Path: CWL/per_cluster_workflow.cwl Branch/Commit ID: CWL |
|
|
|
heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/mr-c/datirium-workflows.git
Path: tools/heatmap-prepare.cwl Branch/Commit ID: license_test |
|
|
|
CroMaSt.cwl
|
https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git
Path: CroMaSt.cwl Branch/Commit ID: main |
