Explore Workflows
View already parsed workflows here or click here to add your own
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screen out taxa
Remove sequences which align against a reference set using bowtie2. The references are preformatted (index files) |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/organism-screening.workflow.cwl Branch/Commit ID: master |
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qc_workflow_wo_waltz.cwl
This workflow is intended to be used to test the QC module, without having to run the long waltz step |
https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/QC/qc_workflow_wo_waltz.cwl Branch/Commit ID: 0.0.33_dmp |
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create_snap_and_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: create_snap_and_analyze.cwl Branch/Commit ID: 44dbe38 |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: preprocess_vcf.cwl Branch/Commit ID: develop |
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wf_main.cwl
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https://github.com/idaks/cwl_modeling.git
Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/main/wf_main.cwl Branch/Commit ID: master |
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download_fastq.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/utils/download_fastq.cwl Branch/Commit ID: master |
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change_formats_and_names.cwl
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https://github.com/kinow/pipeline-v5.git
Path: workflows/subworkflows/assembly/change_formats_and_names.cwl Branch/Commit ID: eosc-life-gos |
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wf-alignment.cwl
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https://github.com/farahzkhan/bcbio_test_cwlprov.git
Path: somatic/somatic-workflow/wf-alignment.cwl Branch/Commit ID: master |
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canine_strelka2_module.cwl
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https://github.com/d3b-center/canine-dev.git
Path: subworkflows/canine_strelka2_module.cwl Branch/Commit ID: master |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 0746e12 |
