Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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giab_haplotypecaller.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/variant_calling/giab_haplotypecaller.cwl Branch/Commit ID: 0f8f97e6173085500b688ca8c601b1ce966dce33 |
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02-trim-se.cwl
ATAC-seq 02 trimming - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/02-trim-se.cwl Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854 |
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Detect DoCM variants
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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AltAnalyze Prepare Genome
Devel version of AltAnalyze Prepare Genome ========================================== hg38 is not supported. Use hardcoded EnsMart72 until AltAnalyze starts support more recent Ensembl releases. |
https://github.com/datirium/workflows.git
Path: workflows/altanalyze-prepare-genome.cwl Branch/Commit ID: e0a30aa1ad516dd2ec0e9ce006428964b840daf4 |
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04-peakcall-se.cwl
ATAC-seq 04 quantification - SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854 |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f |
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Apply filters to VCF file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: 35e6b3ef71b4a2a9caba1dbd5dc424a8809bcc0a |
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downsample unaligned BAM and align
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 5c4125344b1b9125ad04d7e768ecc99901570a7a |
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kfdrc_process_bam.cwl
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https://github.com/kids-first/kf-alignment-workflow.git
Path: subworkflows/kfdrc_process_bam.cwl Branch/Commit ID: 105340db0e99918fd7e8a8e14f1cde3022b44653 |
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scatter2.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatter2.cwl Branch/Commit ID: 89ccbfc53ff3bb6abe2eb90bb7e0091c54c18f5c |