Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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kmer_cache_store
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: f5c11df465aaadf712c38ba4933679fe1cbe03ca |
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group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/datirium/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: 1131f82a53315cca217a6c84b3bd272aa62e4bca |
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count-lines9-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines9-wf-noET.cwl Branch/Commit ID: 86c46cb397de029e4c91f02cca40fa2b54d22f37 |
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duplicated_readgroup_fix.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/utils/duplicated_readgroup_fix.cwl Branch/Commit ID: 286bce04c474d28bddeb7dbe43ab8d59919fe855 |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65 |
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kf_alignment_optimized_wf
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https://github.com/inab/vre_cwl_executor.git
Path: tests/basic/data/workflows/basic_example_3.cwl Branch/Commit ID: 00d6c35e3932bef3906a9158939cc0b74bea2dda |
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umi duplex alignment fastq workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_umi_duplex.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54 |
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taxonomy_check_16S
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https://github.com/ncbi/pgap.git
Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: f5c11df465aaadf712c38ba4933679fe1cbe03ca |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: a7838a5ca72b25db5c2af20a15f34303a839980e |
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assm_assm_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: f5c11df465aaadf712c38ba4933679fe1cbe03ca |
