Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c
	kmer_top_n_extract	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: f1eb0f4eaaf1661044f28d859f7e8d4302525ead
	group-isoforms-batch.cwl Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored.	https://github.com/datirium/workflows.git Path: tools/group-isoforms-batch.cwl Branch/Commit ID: 104059e07a2964673e21d371763e33c0afeb2d03
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c
	kfdrc_process_pe_set.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: subworkflows/kfdrc_process_pe_set.cwl Branch/Commit ID: 105340db0e99918fd7e8a8e14f1cde3022b44653
	scatter-wf4.cwl#main	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-wf4.cwl Branch/Commit ID: 9a8e654a91ea5d26e8452dd1cecf3faf22b7a12e Packed ID: main
	revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/revsort.cwl Branch/Commit ID: 4fe434e969c93c94b690ba72db295d9d52a6f576
	Add snv and indel bam-readcount files to a vcf	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 3a822294da63b4e19446a285e2fef075e23cf3d0
	format_rrnas_from_seq_entry	https://github.com/ncbi/pgap.git Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: f1eb0f4eaaf1661044f28d859f7e8d4302525ead
	Single-Cell Preprocessing Pipeline Devel version of Single-Cell Preprocessing Pipeline ===================================================	https://github.com/datirium/workflows.git Path: workflows/single-cell-preprocess.cwl Branch/Commit ID: 4360fb2e778ecee42e5f78f83b78c65ab3a2b1df