Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 56dafa4 |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 1.1.3 |
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revsort_step_bad_schema.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/revsort_step_bad_schema.cwl Branch/Commit ID: main |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: steps/salmon-quantification.cwl Branch/Commit ID: 69da10a |
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PGAP Pipeline
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https://github.com/slottad/pgap.git
Path: wf_pgap.cwl Branch/Commit ID: master |
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exomeseq.cwl#exomeseq-00-prepare-reference-data.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/exomeseq.cwl Branch/Commit ID: qiime2-workflow Packed ID: exomeseq-00-prepare-reference-data.cwl |
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md5-validate.cwl
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https://github.com/4dn-dcic/pipelines-cwl.git
Path: cwl_awsem_v1/md5-validate.cwl Branch/Commit ID: dev2 |
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count-lines3-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines3-wf.cwl Branch/Commit ID: master |
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predict-workflow.cwl
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https://github.com/johnbradley/iMADS-worker.git
Path: predict_service/predict-workflow.cwl Branch/Commit ID: master |
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Subworkflow for Annotation
\"Main workflow for Metagenome and Metatranscriptome Annotation related CWL file: ./Tools/00_fastp.cwl ./Tools/05_bwa_mem_index.cwl ./Tools/13_subread.cwl ./Workflow/annotation_sw.cwl ./Workflow/megahit_prodigal_sw.cwl ./Workflow/metagenomic_contig_mapping_sw.cwl\" |
https://github.com/RyoMameda/workflow_cwl.git
Path: Workflow/main_w.cwl Branch/Commit ID: main |
