Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	rnaseq-se-dutp.cwl Runs RNA-Seq dUTP BioWardrobe basic analysis with strand specific single-end data file.	https://github.com/Barski-lab/workflows.git Path: workflows/rnaseq-se-dutp.cwl Branch/Commit ID: b8e28a017f7b1a2900ec0fd3b3549f123f0c91b4
	ChIP-seq peak caller workflow MACS2 based This workflow execute peak caller and QC for ChIP-seq using MACS2	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/ChIP-Seq/peak-calling-MACS2.cwl Branch/Commit ID: e1c19e64f6fc210f65472ee227786d33c9b4909a
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	platanusB-w-rRNA.cwl	https://github.com/nigyta/bact_genome.git Path: cwl/workflow/platanusB-w-rRNA.cwl Branch/Commit ID: 0d5faa6e6ea4ba418520f02fa923220282edb238
	baysorStaged.cwl	https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git Path: steps/baysorStaged.cwl Branch/Commit ID: 5b866e480fb557cf53d619a22068c73548e337d5
	align_sort_sa	https://github.com/ncbi/pgap.git Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: e71779665f42fcf34601b0f65e030bb0dd47fa79
	wf.cwl	https://github.com/simleo/runcrate.git Path: cwl/multioutputsource/wf.cwl Branch/Commit ID: array_outputsource
	bgzip and index VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: ec45fad68ca10fb64d5c58e704991b146dc31d28
	kmer_ref_compare_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_ref_compare_wnode.cwl Branch/Commit ID: 803f6367d1b279a7b6dc1a4e8ae43f1bbec9f760
	allele-vcf-rnaseq-pe.cwl Allele specific RNA-Seq (using vcf) paired-end workflow	https://github.com/datirium/workflows.git Path: workflows/allele-vcf-rnaseq-pe.cwl Branch/Commit ID: 9a2c389364674221fab3f0f6afdda799e6aa3247