Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Transcriptome assembly workflow (single-end version)
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/TranscriptomeAssembly-wf.single-end.cwl Branch/Commit ID: master |
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kfdrc_RNAseq_workflow.cwl
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https://github.com/kids-first/kf-rnaseq-workflow.git
Path: workflow/kfdrc_RNAseq_workflow.cwl Branch/Commit ID: master |
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count-lines11-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines11-wf.cwl Branch/Commit ID: main |
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realign-distr.cwl
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https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/realign-distr.cwl Branch/Commit ID: master |
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count-lines6-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines6-wf.cwl Branch/Commit ID: 46b7f9766d1bc8a4871474eee25ec730b4e173da |
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igv-report_maf_workflow.cwl
Workflow to run GetBaseCountsMultiSample fillout on a number of samples, each with their own bam and maf files |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/igv-report_maf_workflow.cwl Branch/Commit ID: master |
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rw-distr.cwl
run scatter-gather for rw stage |
https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/rw-distr.cwl Branch/Commit ID: master |
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SVision-Pro workflow for structural variant detection in cancer samples
A workflow that uses SVision-Pro to identify structural variants in tumor/normal paired samples from Oxford Nanopore Technology (ONT) long-read sequencing data. |
https://github.com/bio-ontology-research-group/crc.git
Path: workflow/main.cwl Branch/Commit ID: main |
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Chipseq alignment with qc and creating homer tag directory
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/chipseq.cwl Branch/Commit ID: downsample_and_recall |
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tnsnv-distr.cwl
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https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/tnsnv-distr.cwl Branch/Commit ID: master |
