Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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picard_markduplicates
Mark duplicates |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 1.0.9 |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 1.0.5 |
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umi per-lane alignment subworkflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: No_filters_detect_variants |
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gk-parse-current.cwl
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https://github.com/vdikan/cwl-gk-thermal.git
Path: cwl/gk-parse-current.cwl Branch/Commit ID: master |
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Single-cell RNA-Seq Analyze
Single-cell RNA-Seq Analyze Runs filtering, normalization, scaling, integration (optionally) and clustering for a single or aggregated single-cell RNA-Seq datasets. |
https://github.com/Barski-lab/sc-seq-analysis.git
Path: workflows/sc-rna-analyze-wf.cwl Branch/Commit ID: main |
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Varscan Workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: varscan/workflow.cwl Branch/Commit ID: toil_compatibility |
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Filter Protein Seeds; Find ProSplign Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: dev |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: master |
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Exome QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: master |
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kmer_ref_compare_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_ref_compare_wnode.cwl Branch/Commit ID: dev |
