Explore Workflows

https://github.com/yyoshiaki/dat2-cwl.git

Path: workflow/transcriptome_assemble/transcriptome_assemble.cwl

Branch/Commit ID: develop

https://github.com/yyoshiaki/virtus.git

Path: workflow/createindex_singlevirus.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 71d9c83

https://github.com/ncbi-hackathons/contamfilter.git

Path: cwl/workflow/contam_euk.cwl

Branch/Commit ID: master

https://github.com/kyusque/ajf_man2hybrid.git

Path: main.cwl

Branch/Commit ID: main

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 0fed1c9

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/immuno.cwl

Branch/Commit ID: low-vaf

This demonstrates how to wrap a \"real\" workflow with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/dockstore-workflow-md5sum-unified.git

Path: checker_workflow_wrapping_workflow.cwl

Branch/Commit ID: 1.3.0

Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups

https://github.com/andurill/access-pipeline.git

Path: workflows/subworkflows/find_hotspots_in_normals.cwl

Branch/Commit ID: master

This is a sample workflow that downloads several files and prcoesses them

https://github.com/fasrc/epa_cwl_airflow.git

Path: workflow/cwl/workflow.cwl

Branch/Commit ID: master