Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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mosdepth_to_coverage_QC.cwl
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https://github.com/YinanWang16/tso500-ctdna-post-processing.git
Path: cwl/workflows/mosdepth_to_coverage_QC.cwl Branch/Commit ID: 1321332ae62d2cf978e35d00c9bcade089dfeb7d |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6 |
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metaspades_pipeline.cwl
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https://github.com/EBI-Metagenomics/CWL-assembly.git
Path: cwl/metaspades_pipeline.cwl Branch/Commit ID: 54294043ace632e0c87bec79b677c09c4495d675 |
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kmer_build_tree
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: b12ec8c8e832151033b9e6c0a76a3c3df18d45da |
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CLE gold vcf evaluation workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_eval_cle_gold.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: be465ad19b07378f3f863f2c4e0019b420c859f2 |
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FASTQ to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a |
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umi molecular alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c |
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Build Bismark indices
Copy fasta_file file to the folder and run run bismark_genome_preparation script to prepare indices for Bismark Methylation Analysis. Bowtie2 aligner is used by default. The name of the output indices folder is equal to the genome input. |
https://github.com/datirium/workflows.git
Path: workflows/bismark-index.cwl Branch/Commit ID: 4360fb2e778ecee42e5f78f83b78c65ab3a2b1df |