Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subsample BAM file creating a tagAlign and pseudoreplicates This workflow creates a subsample from a BAM file creating a tagAlign and pseudoreplicates	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/File-formats/subample-pseudoreplicates.cwl Branch/Commit ID: 06501cfc314e36749043431e67c2990966b452e0
	wgs alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f
	rna amplicon analysis for fasta files RNAs - qc, preprocess, annotation, index, abundance	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/amplicon-fasta.workflow.cwl Branch/Commit ID: 9aba38fd1569287b7256ace7163ac84320909f8a
	pcr-bottleneck-coef.cwl ChIP-seq - map - PCR Bottleneck Coefficients	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/map/pcr-bottleneck-coef.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee
	Vcf concordance evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6
	ROSE: rank ordering of super-enhancers Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)	https://github.com/datirium/workflows.git Path: workflows/super-enhancer.cwl Branch/Commit ID: a839eb6390974089e1a558c49fc07b4c66c50767
	kfdrc_cram_reheader_wf.cwl	https://github.com/cr-ste-justine/chujs-alignment-workflow.git Path: workflows/kfdrc_cram_reheader_wf.cwl Branch/Commit ID: c8255e2aab840f671d9f142d74f915c76415ff51
	Run tRNAScan	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c
	Vcf concordance evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f