Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	mpi_simple_wf.cwl Simple 2 step workflow to check that workflow steps are independently picking up on the number of processes. First run the parallel get PIDs step (on the input num procs) then run (on a single proc) the line count. This should equal the input.	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/mpi_simple_wf.cwl Branch/Commit ID: 84939620c3eec1ab11369849c63237ebfa48da41
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 3bebaf9b70331de9f4845e2223c55082f5a812fb
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_dispatch/2other_species/workflow.cwl Branch/Commit ID: f7894707dd30a0edd199d3b67c4c8678f64c90b3
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_dispatch/2working_files/workflow.cwl Branch/Commit ID: f7894707dd30a0edd199d3b67c4c8678f64c90b3
	process VCF workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 295e7b7f51727c0f2d6cc86ce817449b2e8dba3c
	env-wf3.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/env-wf3.cwl Branch/Commit ID: 7bfd77118cdc80dd7150115dd7a1a7ee6046f6fe
	cluster_blastp_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 5282690e0f634a5f83107ba878fe62cbbb347408
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 505b91e41741ccbcd5ebd2b6a09a3be604f9ece3
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 2801ce53744a085580a8de91cd007c45146b51e8
	EMG assembly for paired end Illumina	https://github.com/proteinswebteam/ebi-metagenomics-cwl.git Path: workflows/emg-assembly.cwl Branch/Commit ID: 316831663e84623eb0e3a260af252fef441924d4