Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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CODEX analysis pipeline using Cytokit
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https://github.com/hubmapconsortium/codex-pipeline.git
Path: steps/ometiff_second_stitching.cwl Branch/Commit ID: cf68e50 |
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oxog_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/svonworl/OxoG-Dockstore-Tools.git
Path: oxog_sub_wf.cwl Branch/Commit ID: develop |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_orf_hmms.cwl Branch/Commit ID: dev |
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ConcordanceCheckerWorkflow.cwl
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https://github.com/DataBiosphere/topmed-workflows.git
Path: vcf-comparator/ConcordanceCheckerWorkflow.cwl Branch/Commit ID: 1.16.0 |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 43d2fb8 |
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MEME motif
This workflow uses MEME suite for motif finding |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/ChIP-Seq/meme-motif.cwl Branch/Commit ID: master |
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scatter_tail.cwl
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https://github.com/giannisdoukas/CWLJNIKernel.git
Path: tests/cwl/scatter_tail.cwl Branch/Commit ID: master |
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varscanW.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/ambarishK/bio-cwl-tools.git
Path: varscanW.cwl Branch/Commit ID: release |
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no-outputs-wf.cwl
Workflow without outputs. |
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/no-outputs-wf.cwl Branch/Commit ID: main |
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main-autofraginfo.cwl
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https://github.com/kyusque/abmp_log_dump2pieda.git
Path: main-autofraginfo.cwl Branch/Commit ID: master |
