Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Exome QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c |
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Non-Coding Bacterial Genes
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa |
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Execute CRISPR
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https://github.com/ncbi/pgap.git
Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 74647cc0f1abac4ee22950cfa89c44cf2ca3cffd |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa |
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Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa |
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Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa |
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basename-fields-test.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/basename-fields-test.cwl Branch/Commit ID: d7cd45f7072960d264962ecc5a04d7c219f65c06 |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa |
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env-wf3.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/env-wf3.cwl Branch/Commit ID: d7cd45f7072960d264962ecc5a04d7c219f65c06 |
