Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Execute CRISPR
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https://github.com/ncbi/pgap.git
Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: master |
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import_schema-def.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/import_schema-def.cwl Branch/Commit ID: 6397014050177074c9ccd0d771577f7fa9f728a3 |
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hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl
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https://github.com/rawgene/cwl.git
Path: workflows/hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl Branch/Commit ID: master |
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Indices builder from GBOL RDF (TTL)
Workflow to build different indices for different tools from a genome and transcriptome. This workflow expects an (annotated) genome in GBOL ttl format. Steps: - SAPP: rdf2gtf (genome fasta) - SAPP: rdf2fasta (transcripts fasta) - STAR index (Optional for Eukaryotic origin) - bowtie2 index - kallisto index |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_indexbuilder.cwl Branch/Commit ID: master |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/svonworl/OxoG-Dockstore-Tools.git
Path: preprocess_vcf.cwl Branch/Commit ID: master |
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main-SGDP-recall.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: SGDP-recall-CGC/SGDP-recall-cgc/main-SGDP-recall.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 2104dc3 |
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vcf_concat.cwl
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https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/subworkflows/vcf_concat.cwl Branch/Commit ID: master |
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orgaquant_wf.cwl
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https://github.com/AlexanderSenf/orgaquant.git
Path: orgaquant_wf.cwl Branch/Commit ID: 1.1 |
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emblem_textures.cwl
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https://github.com/undu/stellaris-emblem-lab.git
Path: textures/emblem_textures.cwl Branch/Commit ID: master |
