Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph encode_mapping_workflow.cwl

https://github.com/ENCODE-DCC/pipeline-container.git

Path: local-workflows/encode_mapping_workflow.cwl

Branch/Commit ID: v1.0
workflow graph preprocess.cwl

https://github.com/Epigenomics-Screw/Screw.git

Path: cwl/preprocess.cwl

Branch/Commit ID: scatter
workflow graph workflow.cwl

https://github.com/FarahZKhan/scalability-reproducibility-chapter.git

Path: CWL/workflow.cwl

Branch/Commit ID: ProvCaptureDemo
workflow graph bqsr-distr.cwl

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/bqsr-distr.cwl

Branch/Commit ID: master
workflow graph biowardrobe_chipseq_se.cwl

Current workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of BigWig file, peaks calling data in a form of narrowPeak or broadPeak files.

https://github.com/Barski-lab/ga4gh_challenge.git

Path: biowardrobe_chipseq_se.cwl

Branch/Commit ID: v0.0.2
workflow graph sum-wf-noET.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/sum-wf-noET.cwl

Branch/Commit ID: master
workflow graph 05-quantification.cwl

ChIP-seq - Quantification - samples: treatment

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/05-quantification.cwl

Branch/Commit ID: master
workflow graph clustering.cwl

https://github.com/epigenomics-screw/screw.git

Path: cwl/clustering.cwl

Branch/Commit ID: master
workflow graph Find reads with predicted coding sequences above 60 AA in length

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/orf_prediction.cwl

Branch/Commit ID: 5dc7c5c
workflow graph metrics.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/metrics.cwl

Branch/Commit ID: 1.1