Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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wflow_all_mc.cwl
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https://github.com/lukasheinrich/cwltests.git
Path: cwl/wflow_all_mc.cwl Branch/Commit ID: master |
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pcr-bottleneck-coef.cwl
ChIP-seq - map - PCR Bottleneck Coefficients |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/map/pcr-bottleneck-coef.cwl Branch/Commit ID: master |
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bacterial_orthology_cond
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https://github.com/ncbi/pgap.git
Path: bacterial_orthology/wf_bacterial_orthology_conditional.cwl Branch/Commit ID: dev |
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fillout_workflow.cwl
Workflow to run GetBaseCountsMultiSample fillout on a number of bam files with a single maf file |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/fillout_workflow.cwl Branch/Commit ID: master |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open reference otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/OPENrefcluster2plot.cwl Branch/Commit ID: master |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: master |
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run_workflow_234.cwl
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https://github.com/ncbi/cwl-demos.git
Path: outlier-hit-detection-pipeline/run_workflow_234.cwl Branch/Commit ID: master |
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functional analysis prediction with InterProScan
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: 3f85843 |
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if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/toolkit/if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl Branch/Commit ID: 0.4.0 |
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downsample unaligned BAM and align
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: No_filters_detect_variants |
