Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	env-wf2.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/env-wf2.cwl Branch/Commit ID: 520acbfb82455c4bdabd5f2ea24842804e1c9f58
	Align reference proteins plane complete workflow	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_protein_alignment.cwl Branch/Commit ID: 2229f26ec424f9ebeb3db7fec3bd3f84a38c7485
	bam_readcount workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 42712bca4c3307d87b6b55f525a4c97cb6f7e288
	count-lines11-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines11-wf.cwl Branch/Commit ID: 520acbfb82455c4bdabd5f2ea24842804e1c9f58
	Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa
	count-lines11-null-step-wf-noET.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/count-lines11-null-step-wf-noET.cwl Branch/Commit ID: 40fcfc01812046f012acf5153cc955ee848e69e3
	Non-Coding Bacterial Genes	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 2229f26ec424f9ebeb3db7fec3bd3f84a38c7485
	Super-enhancer post ChIP-Seq analysis Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)	https://github.com/datirium/workflows.git Path: workflows/super-enhancer.cwl Branch/Commit ID: b957a4f681bf0ca8ebba4e0d0ec3936bf79620c5
	tRNA_selection.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/tRNA_selection.cwl Branch/Commit ID: cac44f2cf14110fde9951161c663c4525772f616