Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Spectral_counting_workflow.cwl

https://github.com/adamscharlotte/CWL-workflow.git

Path: Spectral_counting_workflow.cwl

Branch/Commit ID: master
workflow graph ACTseq_spike_in.cwl

https://github.com/CompEpigen/ChIPseq_workflows.git

Path: CWL/workflows/ACTseq_spike_in.cwl

Branch/Commit ID: master
workflow graph RNASelector as a CWL workflow

https://doi.org/10.1007/s12275-011-1213-z

 https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: 5dc7c5c
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: develop
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: 72cf42a
workflow graph textures.cwl

Create emblem textures

 https://github.com/undu/stellaris-emblem-lab.git

Path: textures/textures.cwl

Branch/Commit ID: cwl
workflow graph metaphlan_wfl.cwl

https://github.com/stevetsa/Metaphlan-ISBCGC.git

Path: metaphlan_wfl.cwl

Branch/Commit ID: master
workflow graph Apply filters to VCF file

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/filter_vcf.cwl

Branch/Commit ID: master
workflow graph find_hotspots_in_normals.cwl

Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/subworkflows/find_hotspots_in_normals.cwl

Branch/Commit ID: master
workflow graph vcf_concat.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/subworkflows/vcf_concat.cwl

Branch/Commit ID: master