Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph annotator_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: 1.0.0
workflow graph scatter GATK HaplotypeCaller over intervals

https://github.com/genome/cancer-genomics-workflow.git

Path: detect_variants/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: toil_compatibility
workflow graph bacterial_kmer

https://github.com/ncbi/pgap.git

Path: bacterial_kmer/wf_bacterial_kmer.cwl

Branch/Commit ID: test
workflow graph Apply filters to VCF file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/filter_vcf_nonhuman.cwl

Branch/Commit ID: master
workflow graph Exome QC workflow

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/qc_exome.cwl

Branch/Commit ID: master
workflow graph workflow.cwl

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5301/workflow.cwl

Branch/Commit ID: main
workflow graph germline-gpu-v4.0.1.cwl

https://github.com/NCGM-genome/WGSpipeline.git

Path: Workflows/germline-gpu-v4.0.1.cwl

Branch/Commit ID: main
workflow graph sar_coherence_parallel_test.cwl#main

Parallel InSAR coherence workflow: 1. Generate InSAR pairs from input date range and burst parameters 2. Process each pair in parallel (scatter) 2. STAC results (removed for now)

https://github.com/jzvolensky/s1-workflows.git

Path: cwl/sar_coherence_parallel_test.cwl

Branch/Commit ID: coherence_parallel_refactor

Packed ID: main
workflow graph wf-variantcall.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: wes-agha-test/wes_chr21_test-workflow-arvados/wf-variantcall.cwl

Branch/Commit ID: master
workflow graph ndppp-pipeline.cwl

https://github.com/tammojan/dpppcwl.git

Path: ndppp-pipeline.cwl

Branch/Commit ID: master