Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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align_merge_sas
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 5331b0836aa7c451d759ef39dc2062000ac21a47 |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 49732e54e2fe2eafd2f82df3c482c73e642f6d64 |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 3897218b16b30a933beecd60a98a300d677207d8 |
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Compute library complexity
This workflow compute library complexity |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/bedtools-bam-pbc.cwl Branch/Commit ID: f9447c1ac522e17531097c93a169a1a31453e874 |
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magicblast-alignment-pe
This workflow aligns the fastq files using magicblast for paired-end samples |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Alignments/magicblast-alignment.cwl Branch/Commit ID: 11f70a71cb68b3960c2d410ba1fdcd3b8a7e1419 |
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Creates FASTA file from BED coordinates
This workflow creates FASTA file from BED coordinates |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/fasta-from-bed.cwl Branch/Commit ID: f37e1346f1d48fe9f2b9282e37997a2e3ffed7e2 |
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BLASTP, parse, dump FASTA
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https://github.com/ncbi/cwl-demos.git
Path: blast-pipelines/simple_three_step.cwl Branch/Commit ID: 0d2a5b145fce0e8424b7cebc4d2881cc30e40ca4 |
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genomics-workspace-cds.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace-cds.cwl Branch/Commit ID: b1e1b906fcfb2c0fad8811fb8ab03009282c1d19 |
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facets
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/facets.cwl Branch/Commit ID: 72353a747f45ffe35863c3b6c70b28a676a97643 |
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samples_fillout_workflow.cwl
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https://github.com/mskcc/pluto-cwl.git
Path: cwl/samples_fillout_workflow.cwl Branch/Commit ID: e19ef998e906eb915cf4351a3599abd9bff57205 |
