Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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dynresreq-workflow-inputdefault.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/dynresreq-workflow-inputdefault.cwl Branch/Commit ID: e67f19d8a713759d761ecad050966d1eb043b85c |
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kfdrc_cram_reheader_wf.cwl
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https://github.com/kids-first/kf-alignment-workflow.git
Path: workflows/kfdrc_cram_reheader_wf.cwl Branch/Commit ID: b8b1a96d015db74ea451bb7bf83a5e48e645ce1f |
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env-wf3.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/env-wf3.cwl Branch/Commit ID: e67f19d8a713759d761ecad050966d1eb043b85c |
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count-lines9-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines9-wf.cwl Branch/Commit ID: c7c379948c02ba8f048d157f06eb903b1bda9894 |
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Cut-n-Run pipeline paired-end
Experimental pipeline for Cut-n-Run analysis. Uses mapping results from the following experiment types: - `chipseq-pe.cwl` - `trim-chipseq-pe.cwl` - `trim-atacseq-pe.cwl` Note, the upstream analyses should not have duplicates removed |
https://github.com/datirium/workflows.git
Path: workflows/trim-chipseq-pe-cut-n-run.cwl Branch/Commit ID: 4360fb2e778ecee42e5f78f83b78c65ab3a2b1df |
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Alignment without BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr_nonhuman.cwl Branch/Commit ID: 00df82a529a58d362158110581e1daa28b4d7ecb |
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strelkaSomaticVariantCaller_v0_1_1.cwl
|
https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/strelkaSomaticVariantCaller_v0_1_1.cwl Branch/Commit ID: a6ca6be021d3d390a74ed6b151432d40f7427ae6 |
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count-lines8-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines8-wf.cwl Branch/Commit ID: e67f19d8a713759d761ecad050966d1eb043b85c |
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echo-wf-default.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/echo-wf-default.cwl Branch/Commit ID: c7c379948c02ba8f048d157f06eb903b1bda9894 |
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validate_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/validate_interleaved_fq.cwl Branch/Commit ID: 084ba4ee91af7bc98abbc6e13c3937cb87f932ae |