Explore Workflows

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: ca6ca613

Validate linearity of camera response including the transition from high-to-low gain channels for cameras with dual-gain readout.

https://github.com/gammasim/workflows.git

Path: workflows/ValidateCameraLinearity.cwl

Branch/Commit ID: main

This workflow runs the RSeQC quality control workflow

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/RSeQC/rseqc-bam-qc-SE.cwl

Branch/Commit ID: master

https://github.com/ngs-mstb/micgent.git

Path: python/lib/MICGENT/data/cwl/gene_extractor.cwl

Branch/Commit ID: master

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/unifiedgenotyper.cwl

Branch/Commit ID: master

https://github.com/stevetsa/Metaphlan-SBCGC.git

Path: metaphlan_wfl.cwl

Branch/Commit ID: master

https://github.com/ForomePlatform/vcf-upload-cwl-pipeline.git

Path: forome_vcf_upload_uri.cwl

Branch/Commit ID: main

https://github.com/ncbi/pgap.git

Path: vecscreen/bacterial_screening.cwl

Branch/Commit ID: 4ee5718856e3e890949ac48b9a30b68e11ccdd11

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: downsample_and_recall

Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl

Branch/Commit ID: 1.0.6