Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Prepare user input

Prepare user input for NCBI-PGAP pipeline

 https://github.com/ncbi/pgap.git

Path: prepare_user_input2.cwl

Branch/Commit ID: master
workflow graph exome alignment and germline variant detection

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/germline_exome.cwl

Branch/Commit ID: low-vaf
workflow graph SetSinglePhotoElectronResponse

Set single photo-electron response spectrum including after pulsing or cross talk.

 https://github.com/gammasim/workflows.git

Path: workflows/SetSinglePhotoElectronResponse.cwl

Branch/Commit ID: main
workflow graph umi per-lane alignment subworkflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/umi_alignment.cwl

Branch/Commit ID: low-vaf
workflow graph alignment_workflow.cwl

https://github.com/databiosphere/topmed-workflows.git

Path: aligner/topmed-cwl/workflow/alignment_workflow.cwl

Branch/Commit ID: 1.32.0
workflow graph wf.cwl#VDJ_Analyze_Reads_TCR.cwl

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: main

Packed ID: VDJ_Analyze_Reads_TCR.cwl
workflow graph scatter GATK HaplotypeCaller over intervals

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: low-vaf
workflow graph functional analysis prediction with InterProScan

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: d3b8e45
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: develop
workflow graph alignment_workflow_md5checker.cwl

https://github.com/databiosphere/topmed-workflows.git

Path: aligner/topmed-cwl/workflow/alignment_workflow_md5checker.cwl

Branch/Commit ID: 1.32.0