Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph assembly-wf-virus.cwl

https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git

Path: Assembly/workflow/assembly-wf-virus.cwl

Branch/Commit ID: 9cb4f73c8b490faebcc39fdd6fe37f693a2e5213
workflow graph step-valuefrom3-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/step-valuefrom3-wf.cwl

Branch/Commit ID: 814bd0405a7701efc7d63e8f0179df394c7766f7
workflow graph abra_workflow.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/ABRA/abra_workflow.cwl

Branch/Commit ID: bccb338be356db83ad178be2aa9634ae86cb5211
workflow graph waltz_workflow_all_bams.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/waltz/waltz_workflow_all_bams.cwl

Branch/Commit ID: 7061957d31023d922501fba61310b2d82de61c15
workflow graph exomeseq-gatk4-03-organizedirectories.cwl

https://github.com/duke-gcb/bespin-cwl.git

Path: subworkflows/exomeseq-gatk4-03-organizedirectories.cwl

Branch/Commit ID: bbe24d8d7fde2e918583b96805909a2867b749d6
workflow graph 01-qc-pe.cwl

ChIP-seq 01 QC - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/01-qc-pe.cwl

Branch/Commit ID: 33385c6a820a9d4d18cff6fc3a533ec8e3c11c6e
workflow graph waltz-workflow.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/waltz/waltz-workflow.cwl

Branch/Commit ID: 09ddd9711fb550f56d52f1806cdefd4a8cd943b0
workflow graph Decompress

Decompress mate pair fastq files

 https://github.com/MG-RAST/amplicon.git

Path: CWL/Workflows/decompress_mate_pair.workflow.cwl

Branch/Commit ID: 989ccc28212983c2ed00e9461639fdf4df6481d4
workflow graph dynresreq-workflow.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/dynresreq-workflow.cwl

Branch/Commit ID: 227f35a5ed50c423afba2353871950aa61d58872
workflow graph Filter ChIP/ATAC peaks for Tag Density Profile or Motif Enrichment analyses

Filters ChIP/ATAC peaks with the neatest genes assigned for Tag Density Profile or Motif Enrichment analyses ============================================================================================================ Tool filters output from any ChIP/ATAC pipeline to create a file with regions of interest for Tag Density Profile or Motif Enrichment analyses. Peaks with duplicated coordinates are discarded.

https://github.com/datirium/workflows.git

Path: workflows/filter-peaks-for-heatmap.cwl

Branch/Commit ID: 8049a781ac4aae579fbd3036fa0bf654532f15be