Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	rnaseq-alignment-quantification-nosplice This workflow QC, alignment and quantification from TPMCalculator for not spliced genomes	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/RNA-Seq/rnaseq-alignment-quantification_nosplice.cwl Branch/Commit ID: 3247592a89deafaa0d9c5910a1cb1d000ef9b098
	Generate genome indices for Bismark Run bismark_genome_preparation script to prepare indices for Bismark Methylation Analysis. Bowtie2 aligner is used by default. The name of the output indices folder is equal to the genome folder name.	https://github.com/datirium/workflows.git Path: workflows/bismark-indices.cwl Branch/Commit ID: 4106b7dc96e968db291b7a61ecd1641aa3b3dd6d
	Seed Protein Alignments	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_seed_1.cwl Branch/Commit ID: 91181df8d9ef8eed9d8f40db707b9a4376fecaf5
	allele-process-strain.cwl	https://github.com/datirium/workflows.git Path: subworkflows/allele-process-strain.cwl Branch/Commit ID: 0ddfca10c41f83bb120c7633e0db9dba7441bca0
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d
	03-map-pe.cwl ChIP-seq 03 mapping - reads: PE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ChIP-seq_pipeline/03-map-pe.cwl Branch/Commit ID: 33385c6a820a9d4d18cff6fc3a533ec8e3c11c6e
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1
	allele-process-reference.cwl	https://github.com/datirium/workflows.git Path: subworkflows/allele-process-reference.cwl Branch/Commit ID: 0ddfca10c41f83bb120c7633e0db9dba7441bca0
	BioExcel-CWL-firstWorkflow.cwl	https://github.com/bioexcel/biobb_wf_cwl_tutorial.git Path: biobb_wf_cwl_tutorial/examples/BioExcel-CWL-firstWorkflow.cwl Branch/Commit ID: dae0ded21eac1b54173ea9cbaa284ade03efa48f
	Immunotherapy Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/immuno.cwl Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1