Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl Branch/Commit ID: master |
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pipeline.cwl
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https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git
Path: pipeline.cwl Branch/Commit ID: master |
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04-peakcall-se.cwl
ATAC-seq 04 quantification - SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl Branch/Commit ID: v1.0.0 |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: develop |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: test |
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wgs alignment and tumor-only variant detection
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: downsample_and_recall |
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wgs alignment and germline variant detection
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https://github.com/genome/cancer-genomics-workflow.git
Path: germline_wgs_workflow.cwl Branch/Commit ID: toil_compatibility |
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oxog_varbam_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: oxog_varbam_annotate_wf.cwl Branch/Commit ID: master |
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createindex.cwl
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https://github.com/yyoshiaki/VIRTUS2.git
Path: workflow/createindex.cwl Branch/Commit ID: master |
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Detect Variants workflow
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https://github.com/ChrisMaherLab/PACT.git
Path: pipelines/snv_indel_post_processing.cwl Branch/Commit ID: master |
