Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Filter single sample sv vcf from paired read callers(Manta/Smoove)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a |
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sum-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/sum-wf.cwl Branch/Commit ID: a70a83fe14a100cd16e2402ec17b2904f5eeb17d |
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count-lines12-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines12-wf.cwl Branch/Commit ID: a70a83fe14a100cd16e2402ec17b2904f5eeb17d |
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Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a |
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Unaligned bam to sorted, markduped bam
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 00df82a529a58d362158110581e1daa28b4d7ecb |
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xenbase-sra-to-fastq-pe.cwl
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https://github.com/datirium/workflows.git
Path: subworkflows/xenbase-sra-to-fastq-pe.cwl Branch/Commit ID: 3ceeb2e90f49579369b2e10485908516348381a9 |
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heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/datirium/workflows.git
Path: subworkflows/heatmap-prepare.cwl Branch/Commit ID: 3ceeb2e90f49579369b2e10485908516348381a9 |
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xenbase-sra-to-fastq-se.cwl
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https://github.com/datirium/workflows.git
Path: subworkflows/xenbase-sra-to-fastq-se.cwl Branch/Commit ID: 3ceeb2e90f49579369b2e10485908516348381a9 |
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count-lines1-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines1-wf.cwl Branch/Commit ID: e67f19d8a713759d761ecad050966d1eb043b85c |