Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph gcaccess_from_list

https://github.com/ncbi/pgap.git

Path: task_types/tt_gcaccess_from_list.cwl

Branch/Commit ID: 0788fbf0432567fd4fc131c6757904841ccd72ba
workflow graph umi molecular alignment fastq workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/umi_molecular_alignment.cwl

Branch/Commit ID: 641bdeffd942f5121e19626a094c8633386ad546
workflow graph SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination

Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.

https://github.com/datirium/workflows.git

Path: tools/soupx-subworkflow.cwl

Branch/Commit ID: 433c10a6ee9f9b07f1af4141e3df6a584dfe86a1
workflow graph extract_gencoll_ids

https://github.com/ncbi/pgap.git

Path: task_types/tt_extract_gencoll_ids.cwl

Branch/Commit ID: d39017c63dd8e088f1ad3809d709529df602e05f
workflow graph Varscan Workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/varscan_germline.cwl

Branch/Commit ID: 5677d6df78453e62d2e78ab485f216feaef91681
workflow graph env-wf2.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/env-wf2.cwl

Branch/Commit ID: 886a6ac41c685f20d39e352f9c657e59f3312265
workflow graph Peptide and Protein ID using OpenMS tools

Adapted from https://gxy.io/GTN:T00228 1. Florian Christoph Sigloch, Björn Grüning, Peptide and Protein ID using OpenMS tools (Galaxy Training Materials). https://training.galaxyproject.org/training-material/topics/proteomics/tutorials/protein-id-oms/tutorial.html Online; accessed Thu Jul 13 2023 2. Hiltemann, Saskia, Rasche, Helena et al., 2023 Galaxy Training: A Powerful Framework for Teaching! PLOS Computational Biology 10.1371/journal.pcbi.1010752 3. Batut et al., 2018 Community-Driven Data Analysis Training for Biology Cell Systems 10.1016/j.cels.2018.05.012

https://github.com/SGSSGene/OpenMS.git

Path: workflow/cwl/peptide_and_protein_id/peptide_and_protein_id.cwl

Branch/Commit ID: 6710c25d43d24c3abf7ce399075fc89e80464c54
workflow graph Peptide and Protein ID using OpenMS tools

Adapted from https://gxy.io/GTN:T00228 1. Florian Christoph Sigloch, Björn Grüning, Peptide and Protein ID using OpenMS tools (Galaxy Training Materials). https://training.galaxyproject.org/training-material/topics/proteomics/tutorials/protein-id-oms/tutorial.html Online; accessed Thu Jul 13 2023 2. Hiltemann, Saskia, Rasche, Helena et al., 2023 Galaxy Training: A Powerful Framework for Teaching! PLOS Computational Biology 10.1371/journal.pcbi.1010752 3. Batut et al., 2018 Community-Driven Data Analysis Training for Biology Cell Systems 10.1016/j.cels.2018.05.012

https://github.com/SGSSGene/OpenMS.git

Path: workflow/cwl/peptide_and_protein_id/peptide_and_protein_id.cwl

Branch/Commit ID: 5f9367169ac8125ae581b028ff0478698c14f884
workflow graph wgs alignment and tumor-only variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/wgs.cwl

Branch/Commit ID: 641bdeffd942f5121e19626a094c8633386ad546
workflow graph count-lines11-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines11-wf.cwl

Branch/Commit ID: 17695244222b0301b37cb749fe4a8d89622cd1ad