Explore Workflows

QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting

https://github.com/bespin-workflows/16s-qiime2.git

Path: 16s-step3-alpha-beta-analysis.cwl

Branch/Commit ID: develop

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/seqprep-subwf.cwl

Branch/Commit ID: master

https://github.com/garyluu/bcbio_validation_workflows.git

Path: wes-agha-test/wes_chr21_test-workflow-gcp/main-wes_chr21_test.cwl

Branch/Commit ID: master

## Activity by Contact Model of Enhancer-Gene Specificity in Common Workflow Language [broadinstitute/ABC-Enhancer-Gene-Prediction: Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)](https://github.com/broadinstitute/ABC-Enhancer-Gene-Prediction)

https://github.com/davidroberson/workflow-notebooks.git

Path: abc_enhancer_gene_prediction/abc-enchancer-gene-prediction-wf.cwl

Branch/Commit ID: main

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/unifiedgenotyper.cwl

Branch/Commit ID: master

This workflow aligns the fastq files using STAR for paired-end samples

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment.cwl

Branch/Commit ID: master

https://github.com/kinow/pipeline-v5.git

Path: workflows/subworkflows/assembly/cgc/CGC-subwf.cwl

Branch/Commit ID: eosc-life-gos

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 135976d

REGENIE workflow

https://github.com/manning-lab/regenie-workflow.git

Path: cwl/regenie_workflow.cwl

Branch/Commit ID: master

This workflow performs telescope calibrations and provides camera calibrations, psfs and optical throughputs.

https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git

Path: workflows/calibpipe/TelescopeCalibrations/uc-cp-200.cwl

Branch/Commit ID: main