Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: master |
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scatter-valuefrom-wf2.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/scatter-valuefrom-wf2.cwl Branch/Commit ID: main |
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exomeseq.cwl#exomeseq-00-prepare-reference-data.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/exomeseq.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: exomeseq-00-prepare-reference-data.cwl |
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Trim and reformat reads (single and paired end version)
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/amplicon/trimming-not-empty-subwf.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: master |
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topmed-alignment.cwl
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https://github.com/stain/topmed-workflows.git
Path: aligner/sbg-alignment-cwl/topmed-alignment.cwl Branch/Commit ID: 4c46a709e7b986a09b9eb27ccdb0540e69e006 |
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Align reference proteins plane complete workflow, with miniprot
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_protein_alignment_miniprot.cwl Branch/Commit ID: test |
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io-int-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/io-int-wf.cwl Branch/Commit ID: master |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: master |
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cnv_manta
CNV Manta calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl Branch/Commit ID: 1.0.6 |
