Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Perform SV calling of sample vs matched control using Delly, Lumpy, and Manta
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https://github.com/mr-c/PACT.git
Path: subworkflows/sv_caller.cwl Branch/Commit ID: 45805a5a6dee3d4038d5533c156642f4e5b6a180 |
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Identify somatic SVs
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https://github.com/mr-c/PACT.git
Path: subworkflows/sv_merge_and_filter.cwl Branch/Commit ID: 45805a5a6dee3d4038d5533c156642f4e5b6a180 |
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SV Pipeline
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https://github.com/mr-c/PACT.git
Path: pipelines/sv_pipeline.cwl Branch/Commit ID: 45805a5a6dee3d4038d5533c156642f4e5b6a180 |
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Create target and anti-target files for CNA analysis
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https://github.com/mr-c/PACT.git
Path: subworkflows/cnvkit_prep_regions.cwl Branch/Commit ID: b533c88cb39e0d03e9fd65fad5e5caa266524d9d |
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Calculate reference coverage
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https://github.com/mr-c/PACT.git
Path: subworkflows/cna_reference_coverage.cwl Branch/Commit ID: b533c88cb39e0d03e9fd65fad5e5caa266524d9d |
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CNA Pipeline
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https://github.com/mr-c/PACT.git
Path: pipelines/cna_pipeline.cwl Branch/Commit ID: b533c88cb39e0d03e9fd65fad5e5caa266524d9d |
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Initial CNVkit analysis
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https://github.com/mr-c/PACT.git
Path: subworkflows/cnvkit_initial_analysis.cwl Branch/Commit ID: b533c88cb39e0d03e9fd65fad5e5caa266524d9d |
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CNA Pipeline
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https://github.com/mr-c/PACT.git
Path: pipelines/cna_pipeline.cwl Branch/Commit ID: afa90537a1d7465aba5fda486d004ced7a805030 |
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Process cnvkit outputs
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https://github.com/mr-c/PACT.git
Path: subworkflows/process_cnvkit_results.cwl Branch/Commit ID: afa90537a1d7465aba5fda486d004ced7a805030 |
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Per-region pindel
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https://github.com/mr-c/PACT.git
Path: subworkflows/pindel_cat.cwl Branch/Commit ID: mr-c-patch-1 |
