Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph FASTQ Vector Removal

This workflow clean up vectros from fastq files

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/remove-fastq-reads-from-blast.cwl

Branch/Commit ID: 793e327acc1d159ff601043ee88651fca62350dd
workflow graph umccrise-pipeline__2.3.0--0.cwl

https://github.com/umccr/cwl-ica.git

Path: workflows/umccrise-pipeline/2.3.0--0/umccrise-pipeline__2.3.0--0.cwl

Branch/Commit ID: ed7d97773da71ac23176e7b99ebe3a92ddc83529
workflow graph exome alignment and somatic variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_nonhuman.cwl

Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e
workflow graph Hello World

Outputs a message using echo

 https://github.com/alexbarrera/GGR-cwl.git

Path: workflows/workflows/hello/hello.cwl

Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134
workflow graph optimal-pipeline.cwl

https://github.com/MaastrichtU-IDS/OptimAL.git

Path: workflow/optimal-pipeline.cwl

Branch/Commit ID: 765874195a34d216749a881e4859752368710052
workflow graph umi per-lane alignment subworkflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/umi_alignment.cwl

Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985
workflow graph Downsample and HaplotypeCaller

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/downsample_and_recall.cwl

Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e
workflow graph gcaccess_from_list

https://github.com/ncbi/pgap.git

Path: task_types/tt_gcaccess_from_list.cwl

Branch/Commit ID: 96dbb414d287f4382e2d477fb1851aeaa5f14f2b
workflow graph strelkaSomaticVariantCaller_v0_1_1.cwl

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/strelkaSomaticVariantCaller_v0_1_1.cwl

Branch/Commit ID: d1bcf010d5c39d5fc01b8862db4f258df7d4f65d
workflow graph exome alignment and germline variant detection

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985