Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	pindel parallel workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: 889a077a20c0fdb01f4ed97aa4bc40f920c37a1a
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1
	bam to trimmed fastqs and biscuit alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1
	Tumor-Only Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 049f4aeff4c4a1b8421cac9b1c1c1f0da5848315
	exome alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 049f4aeff4c4a1b8421cac9b1c1c1f0da5848315
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 61e3752f1f5e2ee498fa024c235226f8580be942
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 41d14ec5e2dfa0fac7eebeefda1f26ccea14c9a0
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 22fce2dbdada0c4135b6f0677f78535cf980cb07
	taxonomy_check_16S	https://github.com/ncbi/pgap.git Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 146df33e2e44afa2a608ac72c036e6b6b871af93
	Detect DoCM variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 72e0bdc1ec449d86df4534132e9a30ad7e9b8afd