Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 77a9fa25b89ce73582a1ce6ba75fa6d2537fb8e8
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 47ccbd0bc7b45bf8b3c92d0a66c1a9a232367a5d
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: ac87e0584685fe04e4010ecd77ae4f055f21d788
	kmer_top_n_extract	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 77a9fa25b89ce73582a1ce6ba75fa6d2537fb8e8
	EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.	https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 25129f55226dee595ef941edc24d3c44414e0523
	steplevel-resreq.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/steplevel-resreq.cwl Branch/Commit ID: 75271e2a0887d47cca4077b60dd51ac763c09b63
	bam_readcount workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: ac87e0584685fe04e4010ecd77ae4f055f21d788
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e
	genomics-workspace-protein.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_genomicsWorkspace/genomics-workspace-protein.cwl Branch/Commit ID: c73baa5e10f074be767be0ff8691fdbc2047ef4a
	PGAP Pipeline PGAP pipeline for external usage, powered via containers	https://github.com/ncbi/pgap.git Path: wf_common.cwl Branch/Commit ID: 6ac47e5703d8c8cdac698de91143829b3911e9b2