Explore Workflows
View already parsed workflows here or click here to add your own
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Nested workflow example
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/nested.cwl Branch/Commit ID: 4635090ef98247b1902b3c7a25c007d9db1cb883 |
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sum-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/sum-wf.cwl Branch/Commit ID: 1e3f5404b7d5af02e3dec0faea31352111ad7cd8 |
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bam to trimmed fastqs and biscuit alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 258bd4353ad1ca7790b3ae626bf42ab8194e7561 |
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scatter-wf3.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf3.cwl Branch/Commit ID: 20d664eff23e59aa57908345bfdb1ceeab3438f2 Packed ID: main |
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scatter-wf4.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf4.cwl Branch/Commit ID: 20d664eff23e59aa57908345bfdb1ceeab3438f2 Packed ID: main |
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ChIPmentation_pipeline.cwl
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https://github.com/CompEpigen/ChIPseq_workflows.git
Path: CWL/workflows/ChIPmentation_pipeline.cwl Branch/Commit ID: 9ba07c9e24e49cd9cb21e6544d73b3f04316cf6f |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 258bd4353ad1ca7790b3ae626bf42ab8194e7561 |
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Run pindel on provided region
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 889a077a20c0fdb01f4ed97aa4bc40f920c37a1a |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 258bd4353ad1ca7790b3ae626bf42ab8194e7561 |
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sum-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/sum-wf.cwl Branch/Commit ID: a3d565bf8e630101d25d31804cfbceb0a0ba28de |
